Hi Anupa
in general recon-all only processes a single dataset at a time. You can run multiple versions of recon-all if you have the processors and memory to support it. Something like:
foreach x ( *) recon-all -i SZ.${x}.nii -s $x -all & end
assuming that you had already converted your dicom files to nifti and named them accordingly.
You will need 4G of ram and a cpu for each process to make this worthwhile I think
cheers Bruce
On Sat, 7 Sep 2013, Anupa AV wrote:
Dear Sir, I'd like to know the command lines for running recon-all for multiple datasets. Can you please help me on that?
I've tried using the following command lines
cd /home/john/Anu (where I kept all the .nii files)
for x in * do recon-all -i SZ*.nii -s $x -all done
But this is not working