Re: [Freesurfer] midsagittal mask

mri_cc. Look in the recon-all.log file for an example command line. You may want to change the output file so that you do not overwrite what is there.

On 8/31/2022 9:56 AM, Sam W wrote:

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Hi Bruce,

Thank you for the response! Which freesurfer command do I need to run with -t 0?

Best regards, Sam

On Sat, Aug 27, 2022 at 3:44 AM Fischl, Bruce BFISCHL@mgh.harvard.edu wrote:

I don’t think we ever write out the mid-sagittal plane, but we do
compute it when we segment the callosum. You could set the lateral
distance to extend the callosum to 0 with -t 0 and then it will
only label cc voxels in the mid-sagittal plane

*From:* freesurfer-bounces@nmr.mgh.harvard.edu
<freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Sam W
*Sent:* Friday, August 26, 2022 8:37 PM
*To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] midsagittal mask

*        External Email - Use Caution *

Hello!

I ran recon-all on my subject, is it possible to create a mask of
the midsagittal plane using freesurfer?

Best regards,

Sam

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