try something like
mri_label2vol --reg $FREESURFER_HOME/average/mni152.register.dat --seg your.mni152.roi.nii.gz --temp $FREESURFER_HOME/subjects/fsaverage/mri/orig.mgz --o your.mni152.roi-in-mni305.nii.gz
On 10/21/19 12:42 PM, Barbour, Tracy,M.D. wrote:
Hello experts,
I am trying to convert insula ROIs that are in MNI 152 2 mm space to MNI305 space. I will eventually this ROI for connectivity analysis.
I ran mri_vol2vol:
/mri_vol2vol --mov $FREESURFER_HOME/subjects/fsaverage/mri/orig.mgz --targ /autofs/cluster/neuromod/Insula_ROIs/left/k10/cluster_1.nii.gz --reg $FREESURFER_HOME/subjects/fsaverage/mri.2mm/reg.2mm.mni152.dat --inv --o cluster_1.mni305.mgz/ / / When I visualize the results the converted ROI is more caudal than the original. What am I doing wrong?
Tracy
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer