Dear Ramesh,
The subfield segmentations requires running recon-all -all first. But you can greatly speed up the execution with the openmp option. Also, you can try running two subjects simultaneously, but only for the recon-all -all part (the subfields use more memory and might crash).
Cheers,
/Eugenio
Juan Eugenio Iglesias
Translational Imaging Group
University College London
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Ramesh Babu mgrameshbabu2013@gmail.com Sent: Saturday, April 29, 2017 9:46:24 AM To: Freesurfer support list Subject: [Freesurfer] Hippo-subfiled Need Help
Dear Experts,
I ave done hippocampal subfield segmentation by using 1x1x1 t1 scan. Please see the attached image and give your suggestions.
It took nearly 7 hrs 10 min. to complete hippo-subfield segmentation for one scan by using the command
recon-all -i grp205_t1.nii -s grp205 -sd grp205 -all
Started at Wed Apr 26 11:03:34 IST 2017 Ended at Wed Apr 26 17:17:35 IST 2017 #@#%# recon-all-run-time-hours 6.234 recon-all -s grp205 finished without error at Wed Apr 26 17:17:35 IST 2017 done
Then for hipposubfield,
recon-all -s grp205 -sd grp205 -hippocampal-subfields-T1
I want to run for 40 scans grp-1 20 scans and grp-2 20 scans. How to modify in the command. Since it is taking long time I want to run 10 scans n give rest again 10 scans. Can I do so?
I am15.6 GiB ram, Intel® Core™ i7-4790 CPU @ 3.60GHz × 8 processor, GeForce GT 610/PCIe/SSE2 graphic card.It is octa core processor. Can I run 8 analysis simultaneously (in 8 separate terminal?).
Your suggestion will be helpful to me to proceed further.
Thanks RB