Thank you, now it works!
Best Francesca
2014-09-08 15:24 GMT+03:00 Douglas Greve greve@nmr.mgh.harvard.edu:
It is not looking for fmc.sm5.DM.lh.nii.gz but rather fmcsm5.nii.gz in
/usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/001
does that file exist? Have you run preproc-sess? doug
On 8/28/14 9:49 AM, Francesca Strappini wrote:
Dear all,
I've run selxavg3-sess and I got this error message when it tried to read the fmcsm file (fmc.sm5.DM.lh.nii.gz).
Thank you for your help, Francesca
shalim-ubuntu:/usr/local/freesurfer/fsfast/MeytalRetinotopy> selxavg3-sess -a rtopy.DM.lh -s SUBJ01 Surface data DM lh
selxavg3-sess logfile is /usr/local/freesurfer/fsfast/MeytalRetinotopy/log/selxavg3-sess-bold-rtopy.DM.lh-140828163352.log
/usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01 Thu Aug 28 16:33:53 IDT 2014 anadir = /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/rtopy.DM.lh DoGLMFit = 1 DoContrasts = 1 UpdateNeeded = 1
------- matlab output -------------------- No window system found. Java option 'MWT' ignored. Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen. Warning: No window system found. Java option 'MWT' ignored.
< M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013b (8.2.0.701) 64-bit (glnxa64) August 13, 2013To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.
sxa3pwd =
/usr/local/freesurfer/fsfast/MeytalRetinotopy
sxa3cmd =
/usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.DM.lh -s SUBJ01
/usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
#@# SUBJ01 ############################### /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01
$Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/fsfast/MeytalRetinotopy/MRIread.m
outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopy Extension format = nii.gz ERROR: cannot determine format of /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/001/fmcsm5 ERROR: attempting to read /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/001/fmcsm5
ERROR: fast_selxavg3() failed\n _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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