11 May
2020
11 May
'20
6:53 p.m.
External Email - Use Caution
by running mri_diff --po mri/ThalamicNuclei.v10.T1.mgz L-VP.mgz I obtain diffcount 0
Il 11 maggio 2020 alle 19.18 "Douglas N. Greve" dgreve@mgh.harvard.edu ha scritto:
Try running this to see if there is a difference mri_diff --po ThalamicNuclei.v10.T1.mgz Left-Ventroposterior.mgz Sometimes it is not easy to see a difference that is just a few voxels On 5/11/2020 3:02 AM, stdp82@virgilio.it mailto:stdp82@virgilio.it wrote: > >External Email - Use Caution By visualizing the output by freeview, I found that it was the same of ThalamicNuclei.v10.T1.mgz. Thanks > > > Il 11 maggio 2020 alle 2.19 Bruce Fischl < fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu > ha scritto:Hi Stefano can you elaborate? Why do you suspect there is an error? cheers Bruce On Mon, 11 May 2020, stdp82@virgilio.it mailto:stdp82@virgilio.it wrote: > > > > External Email - Use CautionPlease, could you check the command line. I suspect that an error is there. Thanks. Stefano mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only 8130 8133 --o Left-Ventroposterior.mgz > > >> > > > Il 30 aprile 2020 alle 18.51 "Douglas N. Greve"< dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu > ha scritto: > > >> > > > You can use mri_binarize --i ThalamicNuclei.v10.T1.mgz--replace-only segid segidreplace ... --o newseg.mgz to create a new segmentation with merged segments, then using vol2subfield with the newseg seg as --sf > > >> > > > On 4/29/2020 7:57 PM, stdp82@virgilio.it mailto:stdp82@virgilio.it wrote:> > >> > > > External Email - Use Caution> > >> > > > Hi list,> > >> > > > vol2subfield --i fmcpr.nii.gz --reg register.dof6.lta --sfThalamicNuclei.v10.T1.mgz --stats stats.dat --avgwf avgwf.dat --avgwfvol avgwfvol.mgz --o f2subf.nii.gz > > >> > > > extracts the time course from each thalamic subregions.> > >> > > > If I would like to merge multiple regions (e.g. --id 8115--id 8116) and extract a single time course from them, which is the way? > > >> > > > Thanks> > >> > > > Stefano_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.