Dear all,
I'm relatively new with Freesurfer, but slowly getting more and more used to it's great possibilities. To be 'sure', I've a question about the design of a GLM.
I want to compare CT in Healthy Controls vs Diseased, and control for age and sex. It appears to me that factors (eg sex) cannot be used as covariate/variable, which forces me to model them as a separate class although I'm not interested in sex differences. This brings me to the following FSGD file:
# HcDis.fsgd
GroupDescriptorFile 1
Title HcDis
Class Hc_Male
Class Hc_Female
Class Dis_Male
Class Dis_Female
Variables Age
Input subjid1 Hc_Male 35
Input subjid2 Dis_Female 30
..
Then the difference between Hc and Dis, corrected for age and sex is given by the contrast matrix
#Hc-vs-Dis.mtx
0.5 0.5 -0.5 -0.5 0 0 0 0 0 0 0 0
Is this correct?
Best,
Martijn