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I have a quick question as it relates to image outputs from freesurfer 6.0 (i.e. /mri/orig/001.mgz vs. nu/T1.mgz). Images below: Left - /mri/orig/001.mgz Right - T1.mgz
The outputs (segmentations/surfaces) look good, but I noticed the output volumes (nu.mgz, T1.mgz, brainmask.mgz) looked tilted compared to the input image (/mri/orig/001.mgz) . Is this expected/possible?
Jim
[cid:image003.png@01D44A8B.E2E44FB0][cid:image004.png@01D44A8B.E2E44FB0]
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