Dear Freesurfer,
I wonder if it is possible to segment just one sub-cortical structures like hippocampus by changing the algorithm (e.g. according to spatial prior knowledge divided the image to some sub-images and do analysis just on that sub-image which we sure the hippocampus located)and by that reducing the processing time ? and another general question I have is that in sub-cortical segmentation commands 1to12 commands of -all flag which parameters can I change to affect the outputs?
Sincerely, Nazanin