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Hello all,
I am using the longitudinal pipeline and keep getting the following error when generating the base for one of our subjects. I have 3 timepoints I am including. I have checked the nu.mgz and orig.mgz files for both the base and each time point. Everything looks fine with the exception of the nu.mgz for timepoint 1 (which is a solid white and looks like a mask). Could this be the problem? I have re-run recon-all for that cross sectional subject, but the image remains the same. Attached the full recon-all.log from the base output.
3d normalization pass 1 of 2
error: MRInormFindControlPoints: could not find enough control points
error: MRInormFindControlPoints failed
@#@FSTIME 2024:08:16:18:05:30 mri_normalize N 10 e 10.45 S 0.04 U 10.40 P 99% M 434992 F 0 R 10859 W 0 c 4 w 11 I 0 O 0 L 1.14 0.90 0.57
@#@FSLOADPOST 2024:08:16:18:05:40 mri_normalize N 10 1.19 0.92 0.58
Linux c0235 3.10.0-1160.24.1.el7.x86_64 #1 SMP Thu Mar 25 21:21:56 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Best,
Jose O. Maximo, Ph.D. | Scientist II Department of Psychiatry and Behavioral Neurobiology Heersink School of Medicine UAB | The University of Alabama at Birmingham Sparks Center 1059 | 1720 7th Ave S | Birmingham, AL 35233 P: 205.934.4245 | jomaximo@uabmc.edumailto:jomaximo@uabmc.edumailto:jomaximo@uabmc.edu mailto:jomaximo@uabmc.edu jomaximo@uabmc.edu