Nick, After running uname -m it says i686.Bit if it's a 64-bit build of freesurfer how come it ran all the other steps on my 32-bit machine?
Chacko.
--- Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
Chacko,
The 64bit build of freesurfer will not run on a 32bit machine. Do you have an older version of freesurfer that might be running? What is the output of:
cat $FREESURFER_HOME/build-stamp.txt
Are you sure your machine is really 32bits? Run 'uname -m' and if the machine is 64bits, it will say x86_64.
Nick
Nick, Im just running one sample of an Analyze format image..freesurfer is installed on a Linux OS
Centos4
platform..but its a 32-bit machine. the sample bert is displayed correctly... im using tksurfer to display lh.orig and rh.orig.. Nick,could this be the problem..im using a 32-bit machine but i ve downloaded the
freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.3-full.tar.gz
version..
Regards
Chacko. --- Nick Schmansky nicks@nmr.mgh.harvard.edu
wrote:
Chacko,
What freesurfer distribution is being used and
what
platform is it installed upon?
In tksurfer, does the sample subject named 'bert' display correctly?
I guess I don't know what you mean by not tesselating correctly and not displaying the volume correctly. What tool is
being
used to display lh.orig or rh.orig? tksurfer? or are you
refering
to the surface outlines as shown in tkmedit?
Nick
No, the nofix surfaces are also displaying just
a
small piece of the surface..similar to the
?h.orig
surfaces.
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
hmmm, looks okay. Can you see the
?h.orig.nofix
surfaces okay? On Thu, 22 Jun 2006, Chacko Cherian wrote:
--- Bruce Fischl
wrote:
> can you send us the recon-all.log file? > On Thu, 22 Jun 2006, Chacko Cherian > wrote: > >> yes the filled.mgz is fine...with the
hemispheres
>> distinctly labelled and no cerebellum. >> >> --- Bruce Fischl
> wrote: >> >>> and does the filled.mgz look correct? Are
the
>>> hemisphere separately >>> labeled and the cerebellum gone? Also,
please
> post >>> these to the list so >>> other people can answer! >>> >>> Bruce >>> >>> >>> On Thu, 22 Jun 2006, Chacko Cherian
wrote:
>>> >>>> Yes when I load the image in tkmedit I
odnt
have
>>> any >>>> problems.Its perfectly clear and >>> coronal,horizonatal >>>> and sagittal are all correct. >>>> >>>> --- Bruce Fischl
>>> wrote: >>>> >>>>> when you load it in tkmedit does it
display
>>>>> properly? That is, is the >>>>> coronal view really coronal? >>>>> On Thu, 22 Jun 2006, Chacko Cherian
wrote:
>>>>> >>>>>> Hello all, >>>>>> I ran an Analyze format image in >>> Fresurfer...just >>>>> the >>>>>> Morphometry and reconstruction
tutorial..but
>>> found >>>>>> that it's creating a filled.mgz volume
but
I'm
>>>>> having >>>>>> a problem in tesselating and creating
the
>>> outputs >>>>>> lh.orig and rh.orig for the left and
right
>>>>>> hemispheres.It displays a very tiny
piece
of
> the >>>>>> volume. >>>>>> Could you please let me know how to > troubleshoot >>>>> this >>>>>> problem.. >>>>>> THanks in advance. >>>>>> >>>>>> Chacko. >>>>>> >>>>>> >>>>>> >>>>>> Chacko Cherian >>>>>> M.S EE >>>>>> Graduate Assistant >>>>>> Department of Psychology >>>>>> Arizona State University. >>>>>> Tempe,AZ. >>>>>> >>>>>> >>>>>> >>> >
>>>>>> Do You Yahoo!? >>>>>> Tired of spam? Yahoo! Mail has the
best
spam
>>>>> protection around >>>>>> http://mail.yahoo.com >>>>>> >
>>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> >>>>> >>>> >>> >> >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>> >>>>>> >>>>>> >>>>> >>>> >>>> >>>> >
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