Thanks. I can replicate the issue. I’ll look into it.
Best, Ruopeng
On Nov 30, 2014, at 12:45 PM, angela.favaro@unipd.it wrote:
thank you for your help please find attached the annot file I am using the 5.3 release
Angela
Would it be possible to send us your annoy file? Are you using the latest dev version of freeview or the one with 5.3 release?
Best, Ruopeng
On Nov 29, 2014, at 4:51 AM, angela.favaro@unipd.it wrote:
Hi all, I have a problem with freeview and I am not sure about the command line to be used to view a mask. I have created an annot file and I would like to have a picture of the mask in the inflated brain with curvature. However when I use the annot file with tksurfer I am able to do so, but with freeview the brain become all black (not in the mask) when the annot file is used. I have read the freeview manual, but I did not fond help in using freeview with command line. Where can I find some help?
the command with tksurfer was:
tksurfer fsaverage lh inflated -curv -gray -annot mymask.annot
with freeview I tried this:
freeview -f fsaverage/surf/lh.inflated:overlay=lh.curv:overlay_threshold=2,5 :annot=mymask.annot -viewport 3d
thank you for any help!
Angela
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