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Hello FreeSurfer specialists,
I am new to FreeSurfer and I am trying to learn how to run the basic recon-all command for multiple subjects at once. Could someone help me with what the command would look like to run a folder full of .nii files (e.g., 01.nii, 02.nii, 03.nii, etc). If I only have 8 cores, am I limited to running 8 cases per command, or can I include all of the cases (40) in the command? I’ve run the command for single cases successfully, now I would like set it and forget it.
Your help is greatly appreciated, thank you!
Spencer Loong Doctoral Student | Clinical Psychology Department of Psychology Loma Linda University SLoong@llu.edu
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