Dear Bruce,
thanks for answering. The recon-all command lines we use is:
recon-all -s subjectID -i /data/subjectID.nii.gz recon-all -s subjectID -all
The files we used are
1) DICOM files
2) nii.gz files, but standard oriented and cut
3) nii.gz files
When we look at the output pictures, they look different (see attached files)
Greetings, Susanne
______________________________________ Susanne Schell, Dipl.-Psych.
Sektion Störungen der Persönlichkeitsentwicklung Klinik für Kinder- und Jugendpsychiatrie Universitätsklinikum Heidelberg
Tel: (+49) - (0)6221-56 35135 e-mail: susanne.schell@med.uni-heidelberg.demailto:susanne.schell@med.uni-heidelberg.de