Re: [Freesurfer] Binary locations--new linux distro

Thanks Kevin. I will do that.

Brian

From: Kevin Teich kteich@nmr.mgh.harvard.edu Date: Mon, 25 Apr 2005 15:20:34 -0400 (EDT) To: "Brian Schweinsburg, Ph.D." bschweinsburg@ucsd.edu Cc: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Binary locations--new linux distro

Thanks; this is a leftover fixed path name in the csurf script. I'll fix it to be relative to the FREESURFER_HOME variable. If you'd like, you can fix your own version by editing the line in csurf that starts with 'set bindir', around line number 118, to be this:

set bindir $env(FREESURFER_HOME)/bin

On Mon, 25 Apr 2005, Brian Schweinsburg, Ph.D. wrote:

...

Hi,

After installing the freesurfer-Linux-rh9-20050415.tar.gz and setting up the SetUpFreeSurfer and FreesurferEnv, I get an error message when csurf loads. It states that it cannot find numerous binaries in /usr/local/freesurfer/beta/bin. This issue seemed to resolve by symbollically linking the my $FREESURFER_HOME/bin directory to previously mentioned one.

Is there a place to change where csurf expects to find the binaries? Did I miss it in the FreesurferEnv setup?

Thanks for your time, Brian

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-- Kevin Teich