It only looks at file time stamps. It knows the order in which files should be created. If it sees the time staamps are out of order, then it re-runs the processes needed to put them in order. You will have to include any special flags like -mprage
On 4/10/18 9:42 AM, Boerwinkle, Anna wrote:
Hi,
I was wondering if you could explain the -make all flag. When you use it with recon-all to rerun after edits, does it determine where to start the recon-all process based on the stamps of the edited files? And if I use other flags (such as -mprage) when I initially ran recon-all, do I need still include those when I rerun with -make all or can -make all also determine and automatically apply the flags I used?
Thank you very much for your help!
Anna
//
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer