Hi Andreas,
if the surfaces and aseg are ok when the skull strip left stuff around, that should be fine. Not sure what's going on with the other one.Probably a topology problem. If you upload the subject we'll take a look Bruce
On Mon, 22 Nov 2010, Andreas Berger wrote:
Hello Surfers,
we just finished processing our subjects (recon-all -all) with freesurfer version 5.0. In 16 out of 240 subjects i found severe errors: in about 4 of them the surface looks damaged (see attached screenshot1), in the others the skullstrip didn't work, in one case gnawing away some brain (see attached screenshot2), in the others there's too much skull left, the surface seems ok though (screenshot3).
all of the 16 subjects looked fine with version 4.5. is this a known issue? by the way, recon-all reported no errors on any of them. will keep using v4.5 for now.
thanks, andreas