This is just a bug fix for tksurfer, reading annotation file. Nothing related to afni script.
Tosa
Xander Meadow wrote:
Just a quick question, will this update be incorporated if I use the UPDATER script from the afni website? I don't necessarily mean right now, but upon the next upgrade. Thanks.
Xander
On Tue, 2004-12-07 at 11:44, Yasunari Tosa wrote:
Fixed MacOSX version of tksurfer is available on our ftp page.
$ ftp surfer.nmr.mgh.harvard.edu
username: anonymous passwd: (your email address) cd /transfer/outgoing/birn/tosa/Update/Mac bin get tksurfer
I verified this works under Powerbook G4 running Panther. Should work for G5 (not compatible with G3). If you have problems, let me know.
Tosa
Brian Schweinsburg, Ph.D. wrote:
Sounds good. Thanks. Brian
From: Bruce Fischl fischl@nmr.mgh.harvard.edu Date: Tue, 7 Dec 2004 11:50:50 -0500 (EST) To: "Brian Schweinsburg, Ph.D." bschweinsburg@ucsd.edu Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Stats and viewing parcellation problem
Hi Brian,
this is a bug that Tosa has fixed. He has a new Mac version of tksurfer that he'll send you shortly.
cheers, Bruce
On Mon, 6 Dec 2004, Brian Schweinsburg, Ph.D. wrote:
Hi All,
I am having problems computing stats using the parcellation file. In addition, when I try to display the parcellation results in tksurfer (File -> Label -> Import Annotation -> rh.aparc.annot), which were completed without an error message using parcellate_subject-rh, I get an error message. I am not sure how to procede. Any hints?
In both error logs, there is a reference to an older location of the Simple_surface_labels2002.txt file, which never existed on my machine. Is that related to the problem?
My machine is a powerbook G4, OS X 10.3.6 with freesurfer-20040218.
I appreciate any assistance. Brian
####### mris_anatomical_stats error message ####### mris_anatomical_stats -b -a $SUBJECTS_DIR/SC002/label/rh.aparc.annot SC002 rh computing statistics for each annotation in /unix-apps/freesurfer-20040218/freesurfer/subjects/SC002/label/rh.aparc.anno t. reading volume /unix-apps/freesurfer-20040218/freesurfer/subjects/SC002/mri/wm... reading input surface /unix-apps/freesurfer-20040218/freesurfer/subjects/SC002/surf/rh.white... Computing inter-vertex distance
computing second fundamental form...reading colortable from annotation file... colortable with 85 entries read (originally /space/neo/5/recon/christophe/Simple_surface_labels2002.txt) reading colortable from annotation file... *** malloc_zone_calloc[3284]: arguments too large: 3221219760,520 CTABreadFrom: could not allocate -1073747536 bin table Cannot allocate memory Bus error
####### Tksurfer error message ####### reading colortable from annotation file... colortable with 85 entries read (originally /space/neo/5/recon/christophe/Simple_surface_labels2002.txt) *** malloc_zone_calloc[3290]: arguments too large: 3221210304, 520 CTABreadFrom: could not allocate -1073756992 bin table Cannot allocate memory
Command Finished
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