Hi Anastasia:
Sorry to bother you again. I am trying to extract trac stats from the FS data. When I run the following script, it gives me an error message:
csh::alanf@cerebro[/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons] : tractstats2table --load-pathstats-from-file /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/Forceps_Major_CC.list.txt --overall --tablefile /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/Forceps_Major_CC.All.table
Parsing the .stats files
ERROR: The stats file autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_101/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt is not found or is too small to be a valid statsfile
However, when I manually checked the* pathstats.overall.txt, *the data is physically there. Am I doing something wrong?
thanks so much,
Alan