Hi Arno,
This is fascinating stuff. In my research, I have come across instances when I felt that a hybrid of ANTS and freesurfer would be very useful. Is this pipeline possible for data processed with the earlier versions of freesurfer say 5.1 ? FS6 just got released in Jan 2017 and I am sure for most ongoing studies, the data have already been processed in earlier versions of freesurfer.
If there is a patch or script to update the data processed using earlier versions of freesurfer, that will save a lot of time than running everything from scratch in FS6.
Please let us know.
Best
Rito
----- Original Message ----- From: Arno Klein binarybottle@gmail.com To: freesurfer@nmr.mgh.harvard.edu Sent: Thu, 23 Feb 2017 20:37:44 -0500 (EST) Subject: [Freesurfer] Mindboggle official software release and publication!
Announcing the official release of Mindboggle (http://mindboggle.info), open source software http://mindboggle.info/software.html and data https://osf.io/ydyxu/ for analyzing the shapes of brain structures from human MRI data (processed through FreeSurfer and optionally through ANTs). The release coincides with a publication in PLoS Computational Biology that documents and evaluates the software:
Klein A, Ghosh SS, Bao FS, Giard J, Hame Y, Stavsky E, Lee N, Rossa B, Reuter M, Neto EC, Keshavan A. (2017) Mindboggling morphometry of human brains. PLoS Computational Biology 13(3): e1005350. doi:10.1371/journal.pcbi.1005350 http://doi.org/10.1371/journal.pcbi.1005350
Cheers, @rno