Hi Arunan
That is a giant defect and means something large (but possibly easily fixable) went wrong. Have you looked at the subject? We have a tutorial on our website for fixing topological defects, but in this case it will be something very large (like a lot of the skull attached, or the 2 hemis connected or something like that)
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Selvarajah, Arunan Sent: Monday, May 24, 2021 8:44 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Processing MRI help
External Email - Use Caution After subscribing to the mail list, I am re-trying this again.
Best, Arunan
From: "Selvarajah, Arunan" <Arunan.Selvarajah@uhnresearch.camailto:Arunan.Selvarajah@uhnresearch.ca> Date: Monday, May 24, 2021 at 8:38 PM To: "freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Cc: Hanna Vasilevskaya <hanna.vasileuskaya@mail.utoronto.camailto:hanna.vasileuskaya@mail.utoronto.ca> Subject: Processing MRI help
Hi,
I am currently using this program to process and eventually analyze MRIs. I was able to process most of our patients, except one. It gets to the “Correcting defect” command and does not proceed any further. I waited about 24 hours before re-running the program. It still stops in the exact same spot. Below is the image of where it stops:
[cidimage001.png@01D750DB.A767B310]
What should I do?
Thanks,
Arunan
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