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Hi Eugenio,
Thanks for your response. I was more wondering if the standard recon-all pipelines (v8.0) are the same for recon-all clinical, since it seems like recon-all in version 8 uses Synthseg by default.
My population is children aged 4-6 years old with cerebral palsy. The T1-weighted scans are MPRAGE, 0.8mm isotropic.
Thanks, Stefanie ________________________________ From: Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Tuesday, July 1, 2025 8:35 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Re: Recon-all clinical vs. FS version 8.0.0
Dear Stefanie,
What type of pathology are we discussing? What ages? What MRI sequence and resolution?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
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From: Stefanie Bradley stefanie.bradley@mail.utoronto.ca Date: Tuesday, July 1, 2025 at 5:49 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Recon-all clinical vs. FS version 8.0.0
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Hi there,
I am analyzing some pediatric brains with clinical pathology, and I was wondering if I would expect a difference in the reconstructions from regular recon-all (Freesurfer version 8.0.0) vs. recon-all clinical, since they both use SynthSeg from what I understand?
Thanks,
Stefanie