to fix this, you will need to edit recon-all (with a text editor). search for this line:
-mask $longbasedir/mri/brain.mgz
and put a \ at the end of it.
n.
On Thu, 2010-04-15 at 11:01 +0200, Lars Tjelta Westlye wrote:
Dear all,
I'm encountering the following error in the otherwise excellent longitudinal scheme when adding the -uselongbasectrlvol flag:
Command: recon-all -long ${s}_tp1 ${s} -all -uselongbasectrlvol
-- #-------------------------------------------- #@# Intensity Normalization Wed Apr 14 18:12:12 CEST 2010 /usit/psi-brain/u1/Felles/labdata/lab-data/intensity/recon/OAS2_0017_MR1.long.OAS2_0017/mri Recompute intensity norm to create OAS2_0017 ctrl_vol.mgz Too many ('s. --
Please confirm that adding \ to the end of line 1093 in recon-all is a valid fix.
Thanks, Lars
bugr:
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