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hello, I'm running the hcp's FreeSurfer pipeline, and for some reason, after working successfully several times, on different subjects, im getting this error: *** /Users/georgieboy/Research/Piano/test/222/222/mri \n mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz \n \n talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm \n ERROR: mpr2mni305 failed, see transforms/talairach_avi.log Darwin medical613-6.tau.ac.il 18.2.0 Darwin Kernel Version 18.2.0: Fri Oct 5 19:41:49 PDT 2018; root:xnu-4903.221.2~2/RELEASE_X86_64 x86_64
recon-all -s 222 exited with ERRORS at Sun Dec 23 15:50:23 IST 2018 ***
the information in the talairach_avi.log is as follows:
*** dyld: Symbol not found: ___keymgr_global Referenced from: /Applications/freesurfer/bin/gauss_4dfp Expected in: /usr/lib/libSystem.B.dylib in /Applications/freesurfer/bin/gauss_4dfp Abort ERROR: 'gauss_4dfp talsrcimg 1.1' failed! status=134 ERROR: mpr2mni305 execution aborted ***
to be clear, this - /usr/lib/libSystem.B.dylib exists exactly where is was expected...
the input image, orig.mgz, looks fine and is in 1 mm res... so im having trouble getting to the bottom of the error.
thanks in advance, Shachar