Hi,
I ran recon-all -all -subjid subjectx on around 40 scans. The registrations and skull strips look fine. However, the white matter and pial surface segmentations miss out the left anterior temporal lobe in most subjects. I tried adding in control points to the left temporal lobe and running recon-all -autorecon2-cp -autorecon3 -subjid subjectx. This helped to fill in the missing areas, but new parts of the right temporal lobe were cut out. I then tried adding in control points to both the left and right temporal lobes, but again new regions of the left temporal lobe were cut out. I think it must be an intensity issue, but I can't see how to fix it. Are you able to give me a work flow to sort this?
Here are some screenshots:
[X][X]Before control points added:
[cid:3abaf95b-5c72-4441-9e12-40d1fd13f01c]
After control points added to left and right temporal lobes:
[cid:e76a0d57-608a-449a-b7b1-e927de878bda]
Thank you.
Best wishes, Clare Gibbard
