Please try: segmentThalamicNuclei.sh 4001 /Applications/freesurfer_dev/freesurfer/subjects/ /Applications/freesurfer_dev/freesurfer/subjects/4001/mri/orig/T2.nii T2_THALAMUS t2 Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández miguelrivasfdez@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Sunday, 8 December 2019 at 15:00 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Thalamic nuclei segmentation
segmentThalamicNuclei.sh 4001 /Applications/freesurfer_dev/freesurfer/subjects/4001/mri/orig/T2.nii THALAMUS BBREGISTER_MODE t2