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Hello, I am also trying to use mkheadsurf and getting the same errors described in the January topic by user Yong-Jun Lin. https://secure-web.cisco.com/1gWrCRE26r6WP8WhRpdFnJDHSFKaCpEOt6y_UEivpQG5fGv... 1. The first error message is "subjdir: Undefined variable.". I followed the thread and also manually defined subjdir 2. Same problems with mris_smooth -n 10 -b /.. resulting in error: MRISwriteCurvature: could not open
lh./...
and
mris_inflate -n 10 -sulc /...
resulting in error: MRISwriteCurvature: could not open /...
Lastly, I followed the response from Douglas N. Greve https://secure-web.cisco.com/1ahbUvtJEJ2YIzAb-v2Vq6dQ8vxhI4tzwwkf_H3Yz4GyLGM7YvV79qByQvW-Kpj0lueIrI67DwfRrcgmTtD9jyK7SHOSxPScms3rWbYgKXx0gVxlWTJGfbgLxIY60CqFq6wtKL5NiCf7m5cYmGxLmtdlstJhehCBfwV-jHzPS4K_mz_LPJ_EjGu9y6BNk-BkZgfRLpTeCVISW1GbVmnRhiCVMukqLVSLal_Yf0Thby0a2tXYTYAVNzaYUsOZyZmw76AXWbWVirtp-NbZYkwVamJt8oi8oXcEPsjjCe8ES6cuQ2JcZ4c4DvGm9KH65Uz7Q/https%3A%2F%2Fwww.mail-archive.com%2Fsearch%3Fl%3Dfreesurfer%40nmr.mgh.harvard.edu%26q%3Dfrom%3A%2522Douglas%2BN.%2BGreve%2522 to try the new mkheadsurf. When I tried that, the subjdir error went away, but the output paths errors with the mris_smooth and mris_inflate persisted. The end result output files that I need were created, however, so I can go on with my work.
But I thought I'd reply to the list and let you know that I'm also getting these path errors.
Thanks for any help, Megan
MEG Technician Pronouns: she/her The Mind Research Network 1101 Yale Blvd. NE Albuquerque, New Mexico 87106