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The "brainstem pipeline" described here:
https://surfer.nmr.mgh.harvard.edu/fswiki/BrainstemSubstructures
Thanks! -Dan
On Wed, 30 May 2018, Bruce Fischl wrote:
Hi Dan
which brainstem atlas do you mean?
cheers Bruce
On Wed, 30 May 2018, djpeters@u.washington.edu wrote:
External Email - Use CautionHi Freesurfer email list,
I'm trying to get the midbrain mask from the brainstem segmentation pipeline into standard space, for use in analyzing some data in other modalities. I have labeled T1s in individual-space (it's a longitudinal pipeline). Does the brainstem atlas already exist somewhere in MNI-space as a mask? If so, where could I find it? I've found the ROI mesh data, but I don't know how to convert that into a voxel mask.
Thanks so much, -Dan Peterson
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