Hi Kareen,
I'll cc the list as others may be interested. You can use mri_annotation2label to extract the label you want. As for which to use, it depends what you want to do with it, but I would expect the individual labels are what you want since they are adjusted to account for individual variations in the anatomy.
cheers Bruce
On Wed, 25 May 2011 kwa1@rice.edu wrote:
Dear Bruce,
How can I access these temporal pole labels within each subject? For each of these TP labels I would like a .label file -- how can I export a file in this format for the R and L TPs? Furthermore, do you recommend the use of this fsaverage subject that you have to apply to all our subjects?
Thank you very much for your help, Kareem
Quoting Bruce Fischl fischl@nmr.mgh.harvard.edu:
Hi Kareem,
both the annotations we automatically compute contain temporal pole labels. Also, the average subject we provide (fsaverage) has both parcellations, so you could just use one of them
cheers Bruce
On Wed, 25 May 2011 kwa1@rice.edu wrote:
Hello,
I have a question about the labeling in tksurfer. My goal is to take an average inflated surface of 10 controls and then make a temporal pole label out of that average.
Alternatively, if FS provides a label for the TP for each patient I could average the labels together.
Do you have any idea how best to do this?
Thanks in advance.
Warm regards, Kareem
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