Thank you Zeke,
What about these?
/usr/local/freesurfer/bin/bet.fsl /usr/local/freesurfer/bin/flirt.fsl /usr/local/freesurfer/bin/slicetimer.fsl
They are not there neither compared to the ubuntu install.
Best, Markus
2014-04-04 19:05 GMT+02:00 Z K zkaufman@nmr.mgh.harvard.edu:
There are 3 missing fsl files from the OSX snow leopard installation. They can be downloaded from here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/zkaufman/fsl
Copy them into your "$FREESURFER_HOME/bin" directory.
-Zeke
On 04/04/2014 12:32 PM, Markus Gschwind wrote:
Dear Freesurfers,
As discovered here,
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg35160.html
it seams that some Mac OSX installations suffered from incomplete files.
I just veryfied that I had downloaded the complete image and wget says
yes:
Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/dist/freesurfer/5.3.0 ...done.
==> SIZE freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.dmg ... 3394499614 File has already been retrieved. 2014-04-04 18:24:26 (0.00 B/s) - 'freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.dmg' saved [3394499614]So this is what I installed recently and it seems that there are some files missing (at least some of the fsl-functions in bin).
Doug, you said that you suspected that it could be a problem of the installer script?
What should we do (also Eiran) in order to complete the installation?
Thanks for you work! Markus
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