Hello all,
I am trying to create an average subject from our pediatric brains and run group analyses with qdec.
After I ran the make_average_subject command, the terminal exited with no errors.
I then open qdec, load our data table, select our common-space subject, select our variables, and hit analyze. An error message pops up that reads: Couldn't find file: /Users/athenadrosos/CRPS/CTgroup_analysis/fsaverage/surf/rh.curv
When I look in this directory all ?h.curv, ?h.pial, ?h.sulc, ?h.thickness, ?h.sphere are shown as shortcuts. Are these files supposed to be created, where should they be, how can I fix this?
The qdec display opens with a gray inflated brain, and the only options on the left side of the gui are to select inflated, pial or white.
The end of the terminal window has errors that read:
Writing to /Users/athenadrosos/CRPS/CTgroup_analysis/qdec/rh.avgpermissions/contrasts.s ig.mgh reading group avg surface area 907 cm^2 from file ERROR: could not find volume /Users/athenadrosos/CRPS/CTgroup_analysis/fsaverage/surf/../mri/orig. Does it exist? Reading in average area /Users/athenadrosos/CRPS/CTgroup_analysis/fsaverage/surf/rh.white.avg.area.m gh reading group avg surface area 1131 cm^2 from file ERROR: could not find volume /Users/athenadrosos/CRPS/CTgroup_analysis/fsaverage/surf/../mri/orig. Does it exist? Reading in average area /Users/athenadrosos/CRPS/CTgroup_analysis/fsaverage/surf/rh.pial.avg.area.mg h reading group avg surface area 907 cm^2 from file ERROR: could not find volume /Users/athenadrosos/CRPS/CTgroup_analysis/fsaverage/surf/../mri/orig. Does it exist? Couldn't find file /Users/athenadrosos/CRPS/CTgroup_analysis/fsaverage/surf/rh.curv
============================================================ Completed loading of analyzed data.
How can I point to the correct /mri/orig. And where should it be? Is it created by the make_average_subject script?
Thank you so much for any help on this matter.
Athena