3 Sep
2013
3 Sep
'13
7:32 a.m.
Hi all,
I posted a message regarding this problem a while ago, but still not resolved. Basically, freesurfer exits with errors in the final (autorecon-3) stages, because of what must be a problem with the symbolic link lh.EC_average. The link is created as should be, but I get an error message saying the file lh.EC_average/surf/lh.sphere.reg doesn't exist. I checked that the path to the subjects directory is correct, and that the file in question exists, and both was the case. I am running out of ideas of how to fix this - does anyone know what might be going wrong?
Best Luzia