External Email - Use Caution
Thank you for your answer!
I think I should clarify this question a little bit. So this is about correcting the Base. And run recon-all *after *correcting the Base. What command should I use here? if I want to regenerate only the Base after correcting it?
Because the common below does not work: (ERROR: must specify subjects for base subject using -base-tp) recon-all -base OAS2_0057 -autorecon-pial
But if I use "recon-all -base OAS2_0001 -tp OAS2_0001_MR1 -tp OAS2_0001_MR2 -all" that just creates a new Base based on the cross MR1 and MR2.
My question is how can I regenerate the corrected Base? What command should I use?
Thank you so much!
All the best, Eszter Boros
Eszter Boros boros.eszter0226@gmail.com ezt írta (időpont: 2021. aug. 8., V, 19:04):
Dear FreeSurfer Team,
I am working on a longitudinal pipeline and after correcting the Cross and generating the Base, I can still see some pial problems sometimes (on the Base).
I read on the Freesurfer website that it is possible to correct and regenerate only the Base, but when I use this command:
recon-all -base OAS2_0057 -autorecon-pial
/where OAS2_0057 is the name of the Base/
I get the following error message:
ERROR: must specify subjects for base subject using -base-tp
Why is this not working? I am using Freesurefer 7.1.1.
Thank you so much!
All the best, Eszter Boros