Hi Stefano, Just specify a directory on your --out /path/to/directory, to which you have write permission- it seems that you can read from the directory /freesurfer/subjects but not write files to it. the other alternative is to ask your IT services to give you write permission for that directory. specifying another loaction as doug suggests will also solve the problem. Hth, shantanu
On Sat, March 2, 2013 11:30 am, stdp82@virgilio.it wrote:
I apologize for my question but I have MD background. Can you explain me more basically about permision?
Thanks for your kindness and patience
Stefano
---Messaggio originale--- Da: greve@nmr.mgh.harvard.edu Data: 2-mar-2013 17.08 A: freesurfer@nmr.mgh.harvard.edu Oggetto: Re: [Freesurfer] mris_preproc question
Stefano, you don't have write permission into /Applications/freesurfer/subjects. Give yourself write permissions or use another folder. Another folder is probably better. doug
On 3/2/13 5:10 AM, stdp82@virgilio.it wrote:
Hi list,
I'm trying to run mris_preproc.
I have my recon-all output in /Application/freesurfer/subjects/subject_prova/folder_for_each_subj
The file.fsgd is in /Application/freesurfer/subjects directory and it is called as prova.fsgd.
When I run:
mris_preproc --fsgd /Applications/freesurfer/subjects/prova.fsgd --target fsaverage --hemi lh \ --meas thickness --out /Applications/freesurfer/subjects/lh.thickness.00.mgh
I obtain:
nsubjects = 37 tmpdir is /Applications/freesurfer/subjects/tmp.mris_preproc.3476 /Applications/freesurfer/subjects mkdir: /Applications/freesurfer/subjects/tmp.mris_preproc.3476: Permission denied ERROR: creating /Applications/freesurfer/subjects/tmp.mris_preproc.3476
To check it, I also attacked the .fsgd file.
Thank you very much,
Stefano
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer