If you have a T1 that you've run through FS and are happy with the skull strip, then you can register your T2 with the FS anatomical (with bbregister), then map the skull stripped T1 into the T2 space (mri_vol2vol), then apply it to the T2 (mri_mask).
doug
On 5/21/11 7:27 PM, Bruce Fischl wrote:
Hi Xiaoying,
unfortunately there isn't. I would recommend BET (from the FSL).
cheers Bruce On Sat, 21 May 2011, Xiaoying Tang wrote:
Hi All,
I am wondering whether there is any way to skull strip a T2 image using freesurfer. I tried to use the same way as for skullstripping T1 image, but always failed.
I would be most grateful if someone can give me some suggestion.
Best, Xiaoying Tang
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer