Can you take a look at the volume that was the input to mri_normalize and see if it looks ok? And check the talairach
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Corinna Bauer Sent: Wednesday, May 5, 2021 5:25 PM To: Mailing Freesurfer List freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] error at 3d normalization pass 1 of 2 stage with MP2RAGE data
External Email - Use Caution Hello all,
I am trying to run recon-all on MP2RAGE data from Philips and it exits with errors at this point: 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Command exited with non-zero status 253
The log file is attached. The input file was the MPRAGE generated on the scanner console (i.e. not the T1 map). I attached a screenshot of orig.mgz viewed in fsleyes. Any thoughts?
Thanks!
Corinna