Hi,
I just tried recon-all with the -use-gpu flag from the current development version of freesurfer (freesurfer-Linux-centos6_x86_64-dev-20161123-bb356e0), but it fail with the message that is cannot open libcudart.so.5.0.
I have the current cuda version install (8.0).
Does freesurfer only work with cuda 5.0? Is there a plan to link the forthcoming 6.0 version with the current version of cuda?
Peter