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Hi, I am trying to make the recon with diffusion images for running tracula. I gave this command:
set cmd = dt_recon
set cmd = ($cmd --b $SUBJECTS_DIR/esq-15-hc/0122816811_007_ep2d_diff_mddw_20_3mm_p2_20190405/processing/31190669_bvals
set cmd = ($cmd --b $SUBJECTS_DIR/esq-15 hc/0122816811_007_ep2d_diff_mddw_20_3mm_p2_20190405/processing/31190669_bvecs)
set cmd = ($cmd --i $SUBJECTS_DIR/esq-15-hc/0122816811_007_ep2d_diff_mddw_20_3mm_p2_20190405/processing/esq-15-hc_dwi.nii.gz)
set cmd = ($cmd --s $SUBJECTS_DIR/esq-15-hc/)
set cmd = ($cmd --o $SUBJECTS_DIR/esq-15-hc/0122816811_007_ep2d_diff_mddw_20_3mm_p2_20190405/processing)
echo $cmd
$cmd
But ir marks two kinds of error: can´t fin bvals.dat or Eddy/Motion correct and stops.
Could yo help me?
Thanks,
JC.