Hi,
I am running Tracula on the MIT BCS cluster. The first step "-prep" finished without error. However, during the second step "-bedp" I received the following error messages.
ba3:~/STUT/tracula> trac-all -bedp -c ~/STUT/tracula/tracula.cfg INFO: SUBJECTS_DIR is /users/cais/STUT/FSDATA INFO: Diffusion root is /users/cais/STUT/tracula Actual FREESURFER_HOME /software/Freesurfer/5.1.0 ln -sf /users/cais/STUT/tracula/S01/dlabel/diff/anat_brain_mask.bbr.nii.gz /users/cais/STUT/tracula/S01/dmri/nodif_brain_mask.nii.gz ln -sf /users/cais/STUT/tracula/S01/dmri/dwi.nii.gz /users/cais/STUT/tracula/S01/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /users/cais/STUT/tracula/S01/dmri subjectdir is /users/cais/STUT/tracula/S01/dmri Making bedpostx directory structure Queuing preprocessing stages [: 223: SGE: unexpected operator [: 314: SGE: unexpected operator [: 327: xbedpostx_pre: unexpected operator [: 486: x: unexpected operator Queuing parallel processing stage [: 223: SGE: unexpected operator [: 327: xbedpostx: unexpected operator [: 486: x67: unexpected operator Queuing post processing stage [: 223: SGE: unexpected operator [: 314: SGE: unexpected operator [: 327: xbedpostx_post: unexpected operator [: 486: x: unexpected operator
It seems that there are errors related to SGE configurations. Anyone has any suggestions w.r.t. how to solve this problem?
Thanks!
Best regards, Shanqing