External Email - Use Caution
Hello,
I am running tracula on some of my DTI data and have had no issues for most of my subjects. However, for one of them I get the following error after mri_segreg
MRISread(/Volumes/DANIEL/freesurfer_pin/APOE.269/surf/lh.white): could not open file
Loading mov
Extracting frame 0
Projecting LH Surfs
Loading lh.white surf
No such file or directory
It doesn't make sense that I am getting this error because when looking in that exact folder I see the following
[255a-280:freesurfer_pin/APOE.269/surf] amos% ls
lh.area lh.smoothwm.FI.crv rh.area rh.smoothwm.FI.crv
lh.curv lh.smoothwm.H.crv rh.curv rh.smoothwm.H.crv
lh.defect_borders lh.smoothwm.K.crv rh.defect_borders rh.smoothwm.K.crv
lh.defect_chull lh.smoothwm.K1.crv rh.defect_chull rh.smoothwm.K1.crv
lh.defect_labels lh.smoothwm.K2.crv rh.defect_labels rh.smoothwm.K2.crv
lh.inflated lh.smoothwm.S.crv rh.inflated rh.smoothwm.S.crv
lh.inflated.H lh.smoothwm.nofix rh.inflated.H rh.smoothwm.nofix
lh.inflated.K lh.sphere rh.inflated.K rh.sphere
lh.inflated.nofix lh.sphere.reg rh.inflated.nofix rh.sulc
lh.orig lh.sulc rh.orig rh.white.H
lh.orig.nofix lh.white.H rh.orig.nofix rh.white.K
lh.qsphere.nofix lh.white.K rh.qsphere.nofix rh.white.preaparc
lh.smoothwm lh.white.preaparc rh.smoothwm rh.white.preaparc.H
lh.smoothwm.BE.crv lh.white.preaparc.H rh.smoothwm.BE.crv rh.white.preaparc.K
lh.smoothwm.C.crv lh.white.preaparc.K rh.smoothwm.C.crv
It looks like the file it can't open is there? I have attached the log file for recon-all and trac-all the subject in case it might help.
Thank you, *Daniel Callow* *PhD Student, Neuroscience and Cognitive Science* Exercise for Brain Health Lab University of Maryland, College Park *ddcc2442@gmail.com ddcc2442@gmail.com* 443-254-6298