Hi Andy,
I'm not sure this makes sense, as the aseg labels are not cortical, and thus won't be close to the surface. Why did the combo not work? You can use mris_sample_parc to sample the asegs onto the surface, but I don't think that will get you where you want to go.
cheers Bruce On Mon, 29 Jun 2009 xforever@ucla.edu wrote:
Dear Freesurfer Experts,
I am trying to combine aparc.annot with aseg.mgz for a Vervet monkey brain, the Aseg.mgz is hand made, not generated by freesurfer. so far I have no luck with it, So i've decided to go with a different approach, which is to add the Aseg (subcortical structures labels) onto the annotation file, then do a label2vol to convert annotations to volume. so I was wondering if there's any command to convert Aseg file into label or annotation format, thank you very much in advance.
Sincerely Andy _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer