Dear Douglas,
Thank you very much for your help, It seems to work now. I got a table with all the FA values, for each segment, but I suspect a problem: I think that the values are too high (I set the threshold to 0.2-1), am I right ? I'm attaching the table I got, and to be specific, I'm very much interested in the Corpus-Colosseum values, which are high (not surprising) but when I wanted to validate with some other structures, like the "left putamen" I saw 0.53 which is to my opinion too high ? I would really appreciate if you can have a look at the table I attached here.
Thanks !
Rotem
2013/2/12 freesurfer-request@nmr.mgh.harvard.edu
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Today's Topics:
- Re: LME matlab toolbox - smooth error (jorge luis)
- Re: mean cortical thickness of significant clusters in qdec (Douglas N Greve)
- Re: A question regarding a "nii-read" error I get when running a script for FA values output (Douglas N Greve)
- Re: Temporal lobes not included (Kristina Nalbandian)
- Re: Temporal lobes not included (Bruce Fischl)
- Re: Temporal lobes not included (Douglas N Greve)
- Re: Freesurfer 5.2 CentOS 4 aparcstats2table error (Nick Schmansky)
- mc-sess Error (Daniel Cole)
- Re: mc-sess Error (Douglas N Greve)
- glmfit-sim trouble (Gabriel Gonzalez Escamilla)
- Re: Freesurfer 5.2 CentOS 4 aparcstats2table error (Garikoitz Lerma-Usabiaga)
- average subject (Linn Mittlestein)
- preparing NHP data for whole brain analysis (Caspar M. Schwiedrzik)
- Post-Doctoral position in brain imaging and computational morphometry ? University of Geneva (Narly Golestani)
- error when using stats import in qdec (Catherine Bois)
- Fwd: error when using stats import in qdec (Catherine Bois)
- Re: Fwd: error when using stats import in qdec (Catherine Bois)
- Re: Fwd: error when using stats import in qdec (Nick Schmansky)
- Re: Fwd: error when using stats import in qdec (Nick Schmansky)
- trac-all problem (Jon Wieser)
- two sample t-test of paired differences (J?rg Pfannm?ller)
- Re: average subject (Bruce Fischl)
- Re: average subject (Linn Mittlestein)
- Re: average subject (Douglas N Greve)
- Basic skullstrip Inquiry (Gabriel Obregon)
- Re: two sample t-test of paired differences (Douglas N Greve)
- Parallelizing on a different kind of cluster (Susan Kuo)
- Re: mean cortical thickness of significant clusters in qdec (Douglas N Greve)
- Re: trac-all -path error (Anastasia Yendiki)
- Re: R: trac-all -path error (Anastasia Yendiki)
- Re: preparing NHP data for whole brain analysis (Douglas N Greve)
- Re: trac-all problem (Anastasia Yendiki)
- Re: Parallelizing on a different kind of cluster (Anastasia Yendiki)
- Re: Troubleshooting the preproc (Anastasia Yendiki)
Message: 1 Date: Mon, 11 Feb 2013 16:57:09 +0000 (GMT) From: jorge luis jbernal0019@yahoo.es Subject: Re: [Freesurfer] LME matlab toolbox - smooth error To: Yolanda Vives yvives@pic.es, "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Message-ID: 1360601829.82122.YahooMailNeo@web172101.mail.ir2.yahoo.com Content-Type: text/plain; charset="iso-8859-1"
Hi Yolanda
This is one of a few scripts in LME that requires an extra Matlab toolbox (maybe the only, besides the statistic toolbox). As it is documented in its header you are require to have the curve fitting toolbox installed to run it successfully.
Best -Jorge
De: Yolanda Vives yvives@pic.es Para: freesurfer@nmr.mgh.harvard.edu Enviado: Lunes 11 de febrero de 2013 6:14 Asunto: [Freesurfer] LME matlab toolbox - smooth error
Dear all
I am a new user of the LME matlab toolbox and I have an error when running lme_lowessPlot due to the smooth function. Do I need a particular matlab toolbox to run this function? I have not seen any smooth function in the LME toolbox.
Error in ==> lme_lowessPlot at 49 ? ? ybw = smooth(st,dat(ix),bw,'rlowess');
Error in ==> LME at 14 lme_lowessPlot(M(:,1),Y(:,1)+Y(:,2),0.70,M(:,2));
Thank you in advance, Yolanda _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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