Andrew,
The automatic failure detection has detected this failure. For the talairach transform, it is sometimes conservative. First, check the talairach transform to make sure it looks ok (fix it if it does not). Then re-run recon-all with -notal-check
doug
Andrew Jahn wrote:
Hi,
I got the following error when trying to run recon-all on an MP-RAGE T1-weighted image:
Fri Apr 10 16:25:01 EDT 2009 talairach_avi done \n cp transforms/talairach.auto.xfm transforms/talairach.xfm \n #-------------------------------------------- #@# Talairach Failure Detection Fri Apr 10 16:25:02 EDT 2009 /usr/local/freesurfer/subjects/MPRAGE/mri \n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Darwin The-Ohio-State-University-Server.local 9.6.0 Darwin Kernel Version 9.6.0: Mon Nov 24 17:37:00 PST 2008; root:xnu-1228.9.59~1/RELEASE_I386 i386
And this was the command I typed:
recon-all -subject MPRAGE -i fmprage.nii -all
auto-recon works for other T1's using a FLASH sequence, for example, but failed on this one. Any help would be greatly appreciated.
Thank you!
-Andrew
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