External Email - Use Caution
Hello Lingyan, You can download an updated Mac freesurfer distribution from the following link,https://drive.google.com/file/d/1v2WwPg68id42NqfMeBTI3zijjto69_C1/view?usp=s... After the download, you can uncompress the freesurfer_Mac.zip archive and put the freesurfer tree anywhere as long as you change the FREESURFER_HOME environment variable to point to it. Then you would run the freesurfer script to setup the environment using that location. For example, you can put the ../freesurfer tree under your home directory which you always have privileges to read/write to. $ cd $HOME$ pwd/Users/lwang <— I am making up this path for this example ... then uncompress the zip archive in to your home directory, here assuming the archive was downloaded into your Downloads folder, $ unzip -d $HOME $HOME/Downloads/freesurfer_Mac.zip … then in Bourne shell or bash shell you could do…. $ export FREESURFER_HOME=$HOME/Mac/freesurfer … and then to setup the environment… $ source $FREESURFER_HOME/SetUpFreeSurfer.sh Then you should no longer see the lazy evaluation error or be concerned with doing an install that needs admin privileges or whether or not SIP is on/off..(Setup instructions for the environment are also here, https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall) - R. On Apr 19, 2019, at 15:17, Wang, Lingyan <Lingyan.Wang@bcm.edu> wrote: External Email - Use Caution Hi,I had this lazy binding problem described in the FS6 releasenotes and couldn't solve it. This is the error message I got when using @SUMA_Make_Spec_Fs:dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylibdyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylibdyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylibdyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylibAnd I've disabled SIP.When I tried use sudo -E fs_update, here is the message I got:Build is freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Running this will update some of your freesurfer binaries. Shall I proceed? [y/n/Abort]: yrsync -zbrlv --progress --suffix=.1555625828_bak rsync://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c/* /Applications/freesurferreceiving file list ... rsync: change_dir "/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c" (in pub) failed: No such file or directory (2)0 files to considersent 4 bytes received 9 bytes 26.00 bytes/sectotal size is 0 speedup is 0.00rsync error: some files could not be transferred (code 23) at /BuildRoot/Library/Caches/com.apple.xbs/Sources/rsync/rsync-51/rsync/main.c(1404) [receiver=2.6.9]The MacOS system is macOS Sierra 10.12.5 and freesurfer is freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96cI was wondering if you have any suggestions to fix this problem. Many thanks!Wang, Lingyan Yau LabDepartment of NeuroscienceBaylor College of Medicine_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer