Re: [Freesurfer] Correction of registration in preproc-sess stream

You can try running register-sess outside of preproc-sess, something like register-sess -s session -fsd bold -per-run -init-spm

before you do that, you need to have spm5 and matlab, and change your matlab/startup.m to add the spm5 path path(path,'/usr/pubsw/common/spm/spm5');

doug

ps. Is this whole brain coverage or are you chopping off some of the brain

On 06/04/2012 11:36 AM, Jörg Pfannmöller wrote:

Dear Doug,

indeed the initialization fails. I was able to initiate bbregister manually, giving a good registration result. Can you give me a hint how to modify the registration and keeping the preproc-sess stream intact?

Cheers

    pfannmoe

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