20 Jun
2018
20 Jun
'18
11:09 p.m.
External Email - Use Caution
Hi Eugenio and Bruce,
We used freesurfer-6.0.0 to segment the brain-stem into different different structures.
I see we get two mgz files after this process: aparc+aseg.mgz and brainstemSsLabels.v10.FSvoxelSpace.mgz
Do you have any recommendations to combine these two masks into a single mask ?
I see pons in brainstemSsLabels.v10.FSvoxelSpace.mgz overlaps with the brain-stem in aparc+aseg.mgz but the midbrain in brainstemSsLabels.v10.FSvoxelSpace.mgz overlaps with brain-stem and the ventral-dc in aparc+aseg.mgz.
Any recommendations are appreciated. Thanks Mehul