Dear FreeSurfer experts,
I have a problem with mri_glmfit.
I am using the following script:
mri_glmfit \ --y lh.AspergerStudy.thickness.10.mgh \ --fsgd FSGD/AspergerStudy.fsgd dods \ --C Contrasts/AS-HC.mtx \ --C Contrasts/HC-AS.mtx \ --surf fsaverage lh \ --cortex \ --glmdir lh.thickness.AspergerStudy.10.glmdir
But when I run it, I obtain an error:
acad1215inv:01_freesurfer_processing acad1215inv$ mri_glmfit \
--y lh.AspergerStudy.thickness.10.mgh \ --fsgd FSGD/AspergerStudy.fsgd dods \ --C Contrasts/AS-HC.mtx \
gdfRead(): reading FSGD/AspergerStudy.fsgd INFO: gd2mtx_method is dods ERROR: must specify GLM output dir acad1215inv:01_freesurfer_processing acad1215inv$ --C Contrasts/HC-AS.mtx \
--surface fsaverage lh \ --cortex \ --glmdir lh.thickness.AspergerStudy.10.glmdir
-bash: --C: command not found
What could I do for solving this problem?
Thanks a lot
Naiara