Hi Ali,
You are missing the tcsh interpreter. It should be located at /bin/tcsh typically.
It usually comes with the operating system but may not have been installed or may be in the wrong place for freesurfer to find it.
I’ve attached a 64 bit i86 version which is from my installation of Fedora Linus.
Regards,
Don
Don Krieger, Ph.D. Department of Neurological Surgery University of Pittsburgh (412)648-9654 Office (412)521-4431 Cell/Text
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Ali Radaideh Sent: Tuesday, August 19, 2014 8:06 AM To: Freesurfer support list Subject: Re: [Freesurfer] tkmedit
Thanks ZK, I got the following message: bash: /usr/local/freesurfer/bin/tkmedit: /bin/tcsh: bad interpreter: No such file or directory
On Tue, Aug 12, 2014 at 5:29 PM, Z K <zkaufman@nmr.mgh.harvard.edumailto:zkaufman@nmr.mgh.harvard.edu> wrote: Ali,
I have not encountered this issue before. Could you please provide a screencapture or copy/paste of the terminal output when you type:
$> tkmedit -f $FREESURFER_HOME/subjects/sample-001.mgz
-Zeke
On 08/12/2014 06:48 AM, Ali Radaideh wrote:
Dear Zeke,
Thanks for your email. For some reasons your email went to the spam folder
The build-stamps.txt file contents:
freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0
freeview does not work
Thanks, Ali
On Tue, Aug 5, 2014 at 11:44 PM, Z K <zkaufman@nmr.mgh.harvard.edumailto:zkaufman@nmr.mgh.harvard.edu <mailto:zkaufman@nmr.mgh.harvard.edumailto:zkaufman@nmr.mgh.harvard.edu>> wrote:
Just so its clear.. You have installed FreeSurfer on 15 Linux machines running Ubuntu? If so, can you please provide me with the contents of the build-stamps.txt file in the FREESURFER_HOME directory? Also, could you please inform me if freeview works by simply typing the freeview command? $> freeview -Zeke On 08/05/2014 04:32 PM, Ali Radaideh wrote: > Dear FreeSurfer experts, > > I have installed FreeSurfer on multiple machines in our image processing > lab (15 PC, Linux Ubuntu) and made sure that the setting are fine. > However, I have tried to test if freesurfer works or not by typing the > following: > > tkmedit bert orig.mgz > > > Unfortunately, I have got the following error message on all PCs > > A segfault has occurred. This is not your fault, > : but is most likely an unrecoverable error and has > : made the program unstable. > > > So what would be the error? > > Many thanks in advance, > Ali, > > > -- > /Ali M. Al-Radaideh. PhD > Assistant Professor > Head of Department of Medical Imaging > Vice Dean of the Faculty of Allied Health Sciences > The Hashemite University, > Zarqa, Jordan > W.phone +962 5 3903333 ext.5422, 5355, 5364 > Email: ali.radaideh@hu.edu.jo<mailto:ali.radaideh@hu.edu.jo> <mailto:ali.radaideh@hu.edu.jo<mailto:ali.radaideh@hu.edu.jo>> <mailto:ali.radaideh@hu.edu.jo<mailto:ali.radaideh@hu.edu.jo> <mailto:ali.radaideh@hu.edu.jo<mailto:ali.radaideh@hu.edu.jo>>> > / > /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/ > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- /Ali M. Al-Radaideh. PhD Assistant Professor Head of Department of Medical Imaging Vice Dean of the Faculty of Allied Health Sciences The Hashemite University, Zarqa, Jordan W.phone +962 5 3903333 ext.5422, 5355, 5364 Email: ali.radaideh@hu.edu.jomailto:ali.radaideh@hu.edu.jo <mailto:ali.radaideh@hu.edu.jomailto:ali.radaideh@hu.edu.jo> / /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/
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-- Ali M. Al-Radaideh. PhD Assistant Professor Head of Department of Medical Imaging Vice Dean of the Faculty of Allied Health Sciences The Hashemite University, Zarqa, Jordan W.phone +962 5 3903333 ext.5422, 5355, 5364 Email: ali.radaideh@hu.edu.jomailto:ali.radaideh@hu.edu.jo webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=