Hi,
I have processed a subject through recon_all successfully. Then I pushed it through the full mri_cvs_register processing using cvs_avg35_inMNI152 as the target. It was also done without errors (in several hours) producing all the expected output files. However, when checking the results of the first step, the spherical registration, the original lh.pial and the resampled lh.resample.pial look almost identical as do the parcellation annotations lh.apac.annot and lh.resample.aparc.annot. Please see a screenshot (the original lh.pial is on the right): [cid:image002.png@01D152A7.B90120D0]
Did the spherical registration perhaps failed (/is buggy) or maybe this is how it is supposed to look like? Please explain! And if it did fail what could I do to fix it? Note that I am using freesurfer-Linux_centos6_x86_64-stable-pub-v5.3.0 from 14th of May, 2013. The final CVS-normalized T1 MR does look like the template.
Thank you,
Zsolt
