Re: [Freesurfer] How to avoid tumour from being segmented out

Hi Melanie

you should be able to fill it in in the wm.mgz volume in either tkmedit or freeview (using 255 if in freeview - tkmedit will do this by default)

cheers Bruce On Wed, 12 Feb 2014, Melanie Morrison wrote:

Hi there,

I am creating surfaces from my volume T1-weight scans so that I can run them in AFNI's SUMA program. Problem is that my tumour has been segmented out because its intensity and the intensity of its surround area is much lower that what is being segmented.

How can I avoid this? Or edit this? I need my functional MRI data to be displayed around the tumour region which is now unfortunately cut out. (HELPP!!!)

Thanks, Melanie Morrison